API Reference
*************

The public interface is the ``wisp`` command line tool, but these modules are
useful when reading or extending the implementation.

Configuration
=============

.. automodule:: wisp_mask.config
   :members:

Workflow
========

.. automodule:: wisp_mask.workflow
   :members: run_workflow, workflow_output_paths

Samples
=======

.. automodule:: wisp_mask.samples
   :members:

Output summaries
================

.. automodule:: wisp_mask.summaries
   :members: summarize_population_count_bed