Changelog

0.1.0

Initial documented release.

Highlights:

  • Build sparse population-count BEDs from BAM/CRAM cohorts.

  • Use an optional variants-only VCF in BAM/CRAM mode to estimate omitted depth/MAPQ thresholds and exclude indel, structural-variant, breakend, and multi-nucleotide polymorphism spans.

  • Build the same output from prefiltered all-sites VCF FORMAT/DP values.

  • Write bgzipped and tabix-indexed wisp.bed.gz output.

  • Include JSON metadata and population column headers in the output BED.